PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9969_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 255aa    MW: 27569.4 Da    PI: 8.4374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9969_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1860110155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+ +++g
  cra_locus_9969_iso_5_len_1155_ver_3  60 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTPEMAARAHDVAAMSIKG 110
                                          68*****998.**********843...6**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-1360110IPR001471AP2/ERF domain
PROSITE profilePS5103223.02461118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3161119IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2161119IPR016177DNA-binding domain
SMARTSM003804.6E-3761124IPR001471AP2/ERF domain
PRINTSPR003675.0E-106273IPR001471AP2/ERF domain
CDDcd000184.01E-3062118No hitNo description
PRINTSPR003675.0E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAAESSSYTS SSSSSSSSSR SSSSSSTSSL KKKKQQRPKR QQIRDNNNHS GGVVNGSKHP  60
VYRGVRMRSW GKWVSEIREP RKKSRIWLGT YSTPEMAARA HDVAAMSIKG KSAILNFPQL  120
TESLPRPASL SPRDVQAAAA KAAAMEELTI TTSSFSPSPS TSSSSSSSMS ESTRTETTAS  180
EELGQIIELP SLEGSCYDSS ESRTELALFD SAEEGWVFPP WLTSDGDLYG FINIDQAAVG  240
EFLIPSSFDT VKWVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1562118360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241746.17e-72PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-62DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK4C7S97e-72K4C7S9_SOLLC; Uncharacterized protein
STRINGSolyc06g066540.1.12e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225